HPVomics

Predicted highly potential siRNAs (HR-HPVs)

S.No.	HPV type	HPV target region	Start position	End position	Sense	Antisense	Inhibition (%)	Off-target (seed)
1	HPV66	E8^E2	235	253	gacatcagtaacaacgcca	tggcgttgttactgatgtc	53.84	26
2	HPV66	E8^E2	199	217	agagagtcctacgcacact	agtgtgcgtaggactctct	53.38	26
3	HPV66	E8^E2	252	270	caacagtagaagtccacgt	acgtggacttctactgttg	52.64	28
4	HPV66	E8^E2	197	215	ccagagagtcctacgcaca	tgtgcgtaggactctctgg	52.42	9
5	HPV66	E8^E2	525	543	gggacaaatgagttgtcca	tggacaactcatttgtccc	51.56	39
6	HPV66	E8^E2	67	85	gagactgttaacgaataca	tgtattcgttaacagtctc	50.67	7
7	HPV66	E8^E2	38	56	gtacctgtagatacaacgt	acgttgtatctacaggtac	50.44	15
8	HPV66	E8^E2	63	81	tgttgagactgttaacgaa	ttcgttaacagtctcaaca	50.38	6
9	HPV66	E8^E2	236	254	acatcagtaacaacgccaa	ttggcgttgttactgatgt	50.3	26
10	HPV66	E8^E2	64	82	gttgagactgttaacgaat	attcgttaacagtctcaac	50.11	6
11	HPV73	E8^E2	345	363	gcattggaccaatactaca	tgtagtattggtccaatgc	63.21	44
12	HPV73	E8^E2	34	52	agcgcctgtgaagtatcca	tggatacttcacaggcgct	52.16	47
13	HPV73	E8^E2	175	193	ctggattgtttgcataacc	ggttatgcaaacaatccag	52.07	35
14	HPV73	E8^E2	146	164	aaagacagtgtgactcgga	tccgagtcacactgtcttt	50.7	21
15	HPV58	E8^E2	151	169	gacaacacccagtactcca	tggagtactgggtgttgtc	56.59	38
16	HPV58	E8^E2	418	436	actgtaacatacacaacgg	ccgttgtgtatgttacagt	51.66	12
17	HPV58	E8^E2	419	437	ctgtaacatacacaacgga	tccgttgtgtatgttacag	50.81	22
18	HPV58	E8^E2	162	180	gtactccacaaagtataca	tgtatactttgtggagtac	50.43	44
19	HPV58	E8^E2	88	106	gccaccaacaacgaaagta	tactttcgttgttggtggc	50.38	9
20	HPV58	E8^E2	247	265	gggcggaacgtgtgtagtt	aactacacacgttccgccc	50.17	46
21	HPV16	E8^E2	284	302	gtaacactacacccatagt	actatgggtgtagtgttac	56.18	43
22	HPV16	E8^E2	38	56	gcagcaacgaagtatcctc	gaggatacttcgttgctgc	55.77	50
23	HPV16	E8^E2	283	301	agtaacactacacccatag	ctatgggtgtagtgttact	53.73	45
24	HPV16	E8^E2	280	298	aatagtaacactacaccca	tgggtgtagtgttactatt	53.41	35
25	HPV16	E8^E2	449	467	atagtgaatggcaacgtga	tcacgttgccattcactat	53.03	25
26	HPV16	E8^E2	135	153	aacacagacgactatccag	ctggatagtcgtctgtgtt	52.75	44
27	HPV16	E8^E2	285	303	taacactacacccatagta	tactatgggtgtagtgtta	52.73	36
28	HPV16	E8^E2	29	47	gatgttacagcagcaacga	tcgttgctgctgtaacatc	52.58	33
29	HPV16	E8^E2	448	466	gatagtgaatggcaacgtg	cacgttgccattcactatc	51.36	25
30	HPV16	E8^E2	134	152	aaacacagacgactatcca	tggatagtcgtctgtgttt	51.13	28
31	HPV16	E8^E2	287	305	acactacacccatagtaca	tgtactatgggtgtagtgt	51.06	36
32	HPV16	E8^E2	142	160	acgactatccagcgaccaa	ttggtcgctggatagtcgt	50.86	13
33	HPV16	E8^E2	288	306	cactacacccatagtacat	atgtactatgggtgtagtg	50.7	34
34	HPV16	E8^E2	367	385	ttgtatactgcagtgtcgt	acgacactgcagtatacaa	50.41	8
35	HPV16	E8^E2	32	50	gttacagcagcaacgaagt	acttcgttgctgctgtaac	50.07	42
36	HPV31	E8^E2	7	25	atactgaagtggaaacgca	tgcgtttccacttcagtat	63.37	33
37	HPV31	E8^E2	10	28	ctgaagtggaaacgcagca	tgctgcgtttccacttcag	57.36	28
38	HPV31	E8^E2	296	314	tcagttgtcctgcaactac	gtagttgcaggacaactga	54.61	39
39	HPV31	E8^E2	29	47	gatggtacagcagtgacga	tcgtcactgctgtaccatc	54.58	19
40	HPV31	E8^E2	9	27	actgaagtggaaacgcagc	gctgcgtttccacttcagt	52.73	26
41	HPV31	E8^E2	473	491	gtacatcacaaagagacga	tcgtctctttgtgatgtac	52.14	47
42	HPV31	E8^E2	8	26	tactgaagtggaaacgcag	ctgcgtttccacttcagta	51.32	23
43	HPV31	E8^E2	30	48	atggtacagcagtgacgaa	ttcgtcactgctgtaccat	51.25	17
44	HPV31	E8^E2	63	81	gattgttacaaagctacca	tggtagctttgtaacaatc	50.89	47
45	HPV31	E8^E2	288	306	aagggctgtcagttgtcct	aggacaactgacagccctt	50.75	39
46	HPV31	E8^E2	32	50	ggtacagcagtgacgaaat	atttcgtcactgctgtacc	50.4	29
47	HPV31	E8^E2	88	106	aacaacaccaccacatcga	tcgatgtggtggtgttgtt	50.35	28
48	HPV31	E8^E2	244	262	gtcaactgtggggttatca	tgataaccccacagttgac	50.31	47
49	HPV33	E8^E2	192	210	caatagaacagcacgtact	agtacgtgctgttctattg	61.27	17
50	HPV33	E8^E2	22	40	ctcagcagatggtacaaca	tgttgtaccatctgctgag	58.85	31
51	HPV33	E8^E2	190	208	gacaatagaacagcacgta	tacgtgctgttctattgtc	56.23	24
52	HPV33	E8^E2	200	218	cagcacgtactgcaactaa	ttagttgcagtacgtgctg	55.34	39
53	HPV33	E8^E2	189	207	ggacaatagaacagcacgt	acgtgctgttctattgtcc	54.55	44
54	HPV33	E8^E2	191	209	acaatagaacagcacgtac	gtacgtgctgttctattgt	53.89	5
55	HPV33	E8^E2	251	269	ctaacgttgcacctatagt	actataggtgcaacgttag	53.34	46
56	HPV33	E8^E2	194	212	atagaacagcacgtactgc	gcagtacgtgctgttctat	52.42	15
57	HPV33	E8^E2	232	250	cagcggactgtgtgtagtt	aactacacacagtccgctg	51.77	46
58	HPV33	E8^E2	224	242	caaacaagcagcggactgt	acagtccgctgcttgtttg	51.09	18
59	HPV33	E8^E2	99	117	accacaagcagcggccaaa	tttggccgctgcttgtggt	50.79	26
60	HPV33	E8^E2	243	261	gtgtagttctaacgttgca	tgcaacgttagaactacac	50.28	30
61	HPV33	E8^E2	234	252	gcggactgtgtgtagttct	agaactacacacagtccgc	50.15	48
62	HPV51	E8^E2	387	405	gcattggaccagtaatact	agtattactggtccaatgc	62.34	44
63	HPV51	E8^E2	272	290	gtgcaactcagactgcgtt	aacgcagtctgagttgcac	55.32	19
64	HPV51	E8^E2	27	45	gaagcaacgttgcagtacc	ggtactgcaacgttgcttc	54.99	42
65	HPV51	E8^E2	22	40	ctgtggaagcaacgttgca	tgcaacgttgcttccacag	53.61	30
66	HPV51	E8^E2	263	281	ggcaccaaagtgcaactca	tgagttgcactttggtgcc	53.6	42
67	HPV51	E8^E2	435	453	cagtgcacatcaacgggaa	ttcccgttgatgtgcactg	53.47	27
68	HPV51	E8^E2	274	292	gcaactcagactgcgttta	taaacgcagtctgagttgc	52.53	22
69	HPV51	E8^E2	434	452	acagtgcacatcaacggga	tcccgttgatgtgcactgt	52.28	19
70	HPV51	E8^E2	85	103	ctatcaaacaccccaacga	tcgttggggtgtttgatag	52.24	24
71	HPV51	E8^E2	275	293	caactcagactgcgtttat	ataaacgcagtctgagttg	52.02	19
72	HPV51	E8^E2	87	105	atcaaacaccccaacgacc	ggtcgttggggtgtttgat	50.75	10
73	HPV51	E8^E2	88	106	tcaaacaccccaacgacca	tggtcgttggggtgtttga	50.69	15
74	HPV51	E8^E2	436	454	agtgcacatcaacgggaaa	tttcccgttgatgtgcact	50.59	26
75	HPV51	E8^E2	273	291	tgcaactcagactgcgttt	aaacgcagtctgagttgca	50.47	35
76	HPV51	E8^E2	86	104	tatcaaacaccccaacgac	gtcgttggggtgtttgata	50.34	16
77	HPV39	E8^E2	25	43	ctgaagtggaggagtacca	tggtactcctccacttcag	57.05	39
78	HPV39	E8^E2	256	274	aacacaagacggtacctca	tgaggtaccgtcttgtgtt	56.42	27
79	HPV39	E8^E2	270	288	cctcagttgtggtaacact	agtgttaccacaactgagg	55.56	47
80	HPV39	E8^E2	267	285	gtacctcagttgtggtaac	gttaccacaactgaggtac	54.62	43
81	HPV39	E8^E2	442	460	tatgccacagagtcacaac	gttgtgactctgtggcata	54.32	50
82	HPV39	E8^E2	446	464	ccacagagtcacaacgcca	tggcgttgtgactctgtgg	53.92	26
83	HPV39	E8^E2	447	465	cacagagtcacaacgccaa	ttggcgttgtgactctgtg	53.92	26
84	HPV39	E8^E2	99	117	gacccattccaccgcaaca	tgttgcggtggaatgggtc	53.62	17
85	HPV39	E8^E2	24	42	gctgaagtggaggagtacc	ggtactcctccacttcagc	53.37	44
86	HPV39	E8^E2	252	270	ccacaacacaagacggtac	gtaccgtcttgtgttgtgg	53.02	3
87	HPV39	E8^E2	251	269	gccacaacacaagacggta	taccgtcttgtgttgtggc	52.95	27
88	HPV39	E8^E2	278	296	gtggtaacactacgcctat	ataggcgtagtgttaccac	52.48	19
89	HPV39	E8^E2	254	272	acaacacaagacggtacct	aggtaccgtcttgtgttgt	52.21	23
90	HPV39	E8^E2	82	100	ttatcaaacaccaccgcga	tcgcggtggtgtttgataa	52.03	20
91	HPV39	E8^E2	448	466	acagagtcacaacgccaaa	tttggcgttgtgactctgt	51.38	19
92	HPV39	E8^E2	100	118	acccattccaccgcaacaa	ttgttgcggtggaatgggt	50.81	11
93	HPV39	E8^E2	279	297	tggtaacactacgcctata	tataggcgtagtgttacca	50.57	17
94	HPV39	E8^E2	253	271	cacaacacaagacggtacc	ggtaccgtcttgtgttgtg	50.43	10
95	HPV39	E8^E2	97	115	gcgacccattccaccgcaa	ttgcggtggaatgggtcgc	50.13	42
96	HPV39	E8^E2	35	53	ggagtaccagtgacggatc	gatccgtcactggtactcc	50	9
97	HPV35	E8^E2	38	56	gcagcacagaactatccac	gtggatagttctgtgctgc	57.94	44
98	HPV35	E8^E2	268	286	gaccggtgtggtagttgta	tacaactaccacaccggtc	56.16	47
99	HPV35	E8^E2	37	55	agcagcacagaactatcca	tggatagttctgtgctgct	55.03	28
100	HPV35	E8^E2	287	305	gtacaactacacctatagt	actataggtgtagttgtac	54.75	46
101	HPV35	E8^E2	82	100	gcctacaacaccaccgaga	tctcggtggtgttgtaggc	54.72	36
102	HPV35	E8^E2	290	308	caactacacctatagtaca	tgtactataggtgtagttg	54.35	36
103	HPV35	E8^E2	266	284	aagaccggtgtggtagttg	caactaccacaccggtctt	53.8	47
104	HPV35	E8^E2	273	291	gtgtggtagttgtagtaca	tgtactacaactaccacac	53.35	20
105	HPV35	E8^E2	80	98	acgcctacaacaccaccga	tcggtggtgttgtaggcgt	53.1	19
106	HPV35	E8^E2	291	309	aactacacctatagtacat	atgtactataggtgtagtt	51.91	34
107	HPV35	E8^E2	183	201	ctacaaccccaccaagcga	tcgcttggtggggttgtag	51.23	30
108	HPV35	E8^E2	185	203	acaaccccaccaagcgagt	actcgcttggtggggttgt	51.11	24
109	HPV35	E8^E2	36	54	cagcagcacagaactatcc	ggatagttctgtgctgctg	50.04	37
110	HPV45	E8^E2	59	77	ctactcagattgttagaca	tgtctaacaatctgagtag	53.74	31
111	HPV45	E8^E2	272	290	gtggtaacactacgcctat	ataggcgtagtgttaccac	52.48	19
112	HPV45	E8^E2	152	170	ctactaagcgacctagaca	tgtctaggtcgcttagtag	51.93	46
113	HPV45	E8^E2	379	397	acctggcattggacaggtt	aacctgtccaatgccaggt	51.38	45
114	HPV45	E8^E2	273	291	tggtaacactacgcctata	tataggcgtagtgttacca	50.57	17
115	HPV45	E8^E2	71	89	ttagacagctacaacacgc	gcgtgttgtagctgtctaa	50.44	17
116	HPV45	E8^E2	202	220	gtcaacacccacgtgcaca	tgtgcacgtgggtgttgac	50.19	25
117	HPV45	E8^E2	271	289	agtggtaacactacgccta	taggcgtagtgttaccact	50.13	11
118	HPV52	E8^E2	7	25	atagtgaagtggaagcgca	tgcgcttccacttcactat	56.55	40
119	HPV52	E8^E2	10	28	gtgaagtggaagcgcagca	tgctgcgcttccacttcac	53.63	40
120	HPV52	E8^E2	30	48	atggcagaccagtaacgaa	ttcgttactggtctgccat	53.05	10
121	HPV52	E8^E2	8	26	tagtgaagtggaagcgcag	ctgcgcttccacttcacta	52.75	32
122	HPV52	E8^E2	69	87	tgtccacctatgcaccgaa	ttcggtgcataggtggaca	51.92	20
123	HPV52	E8^E2	9	27	agtgaagtggaagcgcagc	gctgcgcttccacttcact	50.89	48
124	HPV52	E8^E2	70	88	gtccacctatgcaccgaaa	tttcggtgcataggtggac	50.61	21
125	HPV52	E8^E2	464	482	atgaaacacaacgtcaaca	tgttgacgttgtgtttcat	50.53	12
126	HPV52	E8^E2	136	154	caaccaccacagaaacgac	gtcgtttctgtggtggttg	50.44	35
127	HPV56	E8^E2	295	313	cctggtgataagactacgc	gcgtagtcttatcaccagg	51.62	14
128	HPV56	E8^E2	305	323	agactacgcctgtagtaca	tgtactacaggcgtagtct	51.26	20
129	HPV56	E8^E2	306	324	gactacgcctgtagtacat	atgtactacaggcgtagtc	50.64	34
130	HPV56	E8^E2	38	56	gtacctgtagatacaacgt	acgttgtatctacaggtac	50.44	15
131	HPV56	E8^E2	197	215	ccagagagtcccacgcaaa	tttgcgtgggactctctgg	50.14	9
132	HPV59	E8^E2	71	89	ctgagcaactatcataccc	gggtatgatagttgctcag	58.78	47
133	HPV59	E8^E2	270	288	catcccttgcagtaacact	agtgttactgcaagggatg	58.6	47
134	HPV59	E8^E2	278	296	gcagtaacactacgcctat	ataggcgtagtgttactgc	58.49	19
135	HPV59	E8^E2	72	90	tgagcaactatcatacccc	ggggtatgatagttgctca	57.46	48
136	HPV59	E8^E2	12	30	gaagtggaaatgctcgaga	tctcgagcatttccacttc	56.78	26
137	HPV59	E8^E2	64	82	ggatcttctgagcaactat	atagttgctcagaagatcc	55.91	39
138	HPV59	E8^E2	276	294	ttgcagtaacactacgcct	aggcgtagtgttactgcaa	55.22	22
139	HPV59	E8^E2	277	295	tgcagtaacactacgccta	taggcgtagtgttactgca	54.95	11
140	HPV59	E8^E2	275	293	cttgcagtaacactacgcc	ggcgtagtgttactgcaag	54.77	9
141	HPV59	E8^E2	279	297	cagtaacactacgcctata	tataggcgtagtgttactg	54.42	17
142	HPV59	E8^E2	274	292	ccttgcagtaacactacgc	gcgtagtgttactgcaagg	54.16	9
143	HPV59	E8^E2	11	29	tgaagtggaaatgctcgag	ctcgagcatttccacttca	53.13	13
144	HPV59	E8^E2	14	32	agtggaaatgctcgagact	agtctcgagcatttccact	52.98	36
145	HPV59	E8^E2	70	88	tctgagcaactatcatacc	ggtatgatagttgctcaga	52.73	35
146	HPV59	E8^E2	40	58	agtgacgagcaagtatcca	tggatacttgctcgtcact	52.37	47
147	HPV59	E8^E2	13	31	aagtggaaatgctcgagac	gtctcgagcatttccactt	51.68	21
148	HPV59	E8^E2	34	52	agtaccagtgacgagcaag	cttgctcgtcactggtact	51.28	14
149	HPV59	E8^E2	10	28	ctgaagtggaaatgctcga	tcgagcatttccacttcag	50.51	8
150	HPV59	E8^E2	439	457	acatatacaagcgaaacac	gtgtttcgcttgtatatgt	50.15	10
151	HPV18	E8^E2	59	77	ctactcagcttgttaaaca	tgtttaacaagctgagtag	53.48	46
152	HPV18	E8^E2	215	233	ttctcggtgcagctacacc	ggtgtagctgcaccgagaa	52.92	36
153	HPV18	E8^E2	266	284	gtggtaacactacgcctat	ataggcgtagtgttaccac	52.48	19
154	HPV18	E8^E2	467	485	ttgcaattccagatagtgt	acactatctggaattgcaa	52.08	50
155	HPV18	E8^E2	417	435	gactgtaacataccatagt	actatggtatgttacagtc	51.29	39
156	HPV18	E8^E2	29	47	gattcagtaccagtgacga	tcgtcactggtactgaatc	50.67	19
157	HPV18	E8^E2	267	285	tggtaacactacgcctata	tataggcgtagtgttacca	50.57	17
158	HPV18	E8^E2	265	283	agtggtaacactacgccta	taggcgtagtgttaccact	50.13	11
159	HPV82	E8^E2	73	91	actgttgaacagctatcga	tcgatagctgttcaacagt	52.96	10
160	HPV82	E8^E2	22	40	ctgtggaaggacccttaca	tgtaagggtccttccacag	52.58	38
161	HPV82	E8^E2	30	48	ggacccttacagtacctac	gtaggtactgtaagggtcc	52.54	25
162	HPV82	E8^E2	74	92	ctgttgaacagctatcgaa	ttcgatagctgttcaacag	51.83	16
163	HPV82	E8^E2	31	49	gacccttacagtacctaca	tgtaggtactgtaagggtc	50.54	46
164	HPV68	E8^E2	61	79	gaatctgttgccgacctac	gtaggtcggcaacagattc	54.14	15
165	HPV68	E8^E2	275	293	gtgacactacacctatagt	actataggtgtagtgtcac	53.42	46
166	HPV68	E8^E2	76	94	ctacagaacaccaccgcga	tcgcggtggtgttctgtag	52.83	20
167	HPV68	E8^E2	60	78	tgaatctgttgccgaccta	taggtcggcaacagattca	52.35	33
168	HPV68	E8^E2	56	74	ctactgaatctgttgccga	tcggcaacagattcagtag	51.8	30
169	HPV68	E8^E2	440	458	tttcagaagcacaacgtga	tcacgttgtgcttctgaaa	51.68	25
170	HPV68	E8^E2	74	92	acctacagaacaccaccgc	gcggtggtgttctgtaggt	51.47	19
171	HPV68	E8^E2	442	460	tcagaagcacaacgtgaca	tgtcacgttgtgcttctga	51.17	17
172	HPV68	E8^E2	62	80	aatctgttgccgacctaca	tgtaggtcggcaacagatt	51.16	45
173	HPV68	E8^E2	437	455	atgtttcagaagcacaacg	cgttgtgcttctgaaacat	50.54	48
174	HPV68	E8^E2	21	39	actaactcggagtaccact	agtggtactccgagttagt	50.21	50
175	HPV68	E8^E2	439	457	gtttcagaagcacaacgtg	cacgttgtgcttctgaaac	50.16	15
176	HPV26	E8^E2	79	97	gagccagtatcaaacgcca	tggcgtttgatactggctc	53.09	29
177	HPV26	E8^E2	78	96	tgagccagtatcaaacgcc	ggcgtttgatactggctca	50.7	33
178	HPV26	E8^E2	241	259	cagtcagtggactatacaa	ttgtatagtccactgactg	50.43	46
179	HPV53	E8^E2	290	308	ctggtggagcttcgtgtaa	ttacacgaagctccaccag	56.47	24
180	HPV53	E8^E2	289	307	cctggtggagcttcgtgta	tacacgaagctccaccagg	55.28	26
181	HPV53	E8^E2	335	353	agactgcacctgtagtaca	tgtactacaggtgcagtct	54.45	20
182	HPV53	E8^E2	336	354	gactgcacctgtagtacat	atgtactacaggtgcagtc	53.71	34
183	HPV53	E8^E2	232	250	gcagagtgtgtcgcaagga	tccttgcgacacactctgc	53.52	22
184	HPV53	E8^E2	291	309	tggtggagcttcgtgtaac	gttacacgaagctccacca	51.92	24
185	HPV53	E8^E2	498	516	agatgaaacccaacgccaa	ttggcgttgggtttcatct	51.5	26
186	HPV53	E8^E2	16	34	aaacagtggaagcaacgca	tgcgttgcttccactgttt	51.11	15
187	HPV53	E8^E2	497	515	aagatgaaacccaacgcca	tggcgttgggtttcatctt	51.02	26
188	HPV53	E8^E2	361	379	ggtgaagcaaacagactaa	ttagtctgtttgcttcacc	51.01	41
189	HPV53	E8^E2	19	37	cagtggaagcaacgcaaca	tgttgcgttgcttccactg	50.63	8
190	HPV53	E8^E2	17	35	aacagtggaagcaacgcaa	ttgcgttgcttccactgtt	50.47	19